PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s966651g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family Nin-like
Protein Properties Length: 717aa    MW: 78963 Da    PI: 6.1412
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s966651g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK25.23.2e-08526562128
             RWP-RK   1 aekeisledlskyFslpikdAAkeLg.........vc 28 
                        aek+isle+l++yFs+++kdAAk+Lg         vc
  PDK_30s966651g002 526 AEKSISLEVLQQYFSGSLKDAAKSLGdtggrslppVC 562
                        589**********************966666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF557812.0E-592170IPR029016GAF domain-like
SuperFamilySSF542771.24E-22615708No hitNo description
PROSITE profilePS5174518.27622704IPR000270PB1 domain
SMARTSM006664.8E-24622704IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2401.4E-24622703No hitNo description
CDDcd064072.19E-34623703No hitNo description
PfamPF005647.6E-14623703IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
NVDVRYGKVN ANNSQARQLP MPAVEGNADD SCVIKERMTQ ALRYFKESTD QHVLVQVWAP  60
MKKGDRCFLT TSGQPFVLGP QSTRLLQYRT VSLMYIFSVD EDGEGYLGLP GRVFRHRQPE  120
WTPNVQYYSS KEYPRLTHAL HYNVQGTLAL PVFDPSGQSC IGVIELIMTS QKINYAREVD  180
KVCKALQAAL LTLTCYVALV DSTELCEQHI LIILQAVNLR SSEILDHPNI QISNEGRQSA  240
LAEILEVLTV VCEAHKLPLA QAWVPCKCRT ILAHGGGLKK ICSSFDGSCM GQVCMSTTDV  300
AFYVIDAHMW GFREACVEHH LQIGQGVAGR AFALRRPCFA EDVTKFSKSE YPLVHYARMF  360
GLVGCLAICL QSTHSGDDDY VLEFFLPHDC KNLIEQQALL DSISALMKQC FRSLKVVSEL  420
ELQEGISFEI ISMFANENHG FEPDHICSQI CDAHLHTSPE TYILEGHDDS QNEGNVTSDS  480
HVLHLPTHAN AEKASNIHFD SGGGGASTAR LSNKNNGAPE KRRGKAEKSI SLEVLQQYFS  540
GSLKDAAKSL GDTGGRSLPP VCLMRGVNVA KPQPPLAGMM IEDSGSSKDL KNLCSNAGEG  600
CQDEHAMAAN PLNPMAMQET KTLTIKASHK EDIIRFRLPC TAGIVALKDE VAKRLKLEVG  660
TFDIKYLDDD HEWVMLACNA DLEECIEMSR LSGSPVIRLA VHDIVAHLGS SYGSSGD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777047.10.0PREDICTED: protein NLP3-like
SwissprotQ5NB820.0NLP3_ORYSJ; Protein NLP3
TrEMBLM0TMI10.0M0TMI1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P04280_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47783660
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64530.10.0Nin-like family protein